PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g049030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 326aa MW: 37266.5 Da PI: 9.8041

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g049030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.1	4.1e-17	22	101	2	72
trihelix 2 WtkqevlaLiearremeer.lrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+l+Liea++ eer +rr++ +++ +W+++ +++++rg++r+++qC++kw+nl + ykki+e e++r Csa04g049030.1 22 WTVSETLVLIEAKEMEEERrVRRSEkktenrnkSIELRWKWIEEYCWRRGCQRNQNQCNDKWDNLMRGYKKIREYERSRI 101 ***********9544440444323444444499***************************************9983 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.155	14	87	IPR017877	Myb-like domain
Pfam	PF13837	1.3E-11	21	105	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAEPSGGGAR EMVMREYRKG NWTVSETLVL IEAKEMEEER RVRRSEKKTE NRNKSIELRW 60 KWIEEYCWRR GCQRNQNQCN DKWDNLMRGY KKIREYERSR IESSFNTGSS SSRPASYWKM 120 EKSERKERSL PSNMLSRIYD ALAELVEKKT LPYGNGGQIL RVCQEFVAPM MAQAMHQIPT 180 TIVLSLQSPP PPQPLVLSHP PLPQPPLFTF HAEPIQPTVD TSGAKRRRTT TPRETTTKQG 240 ESTEDAEVMV GAAISRSALV VAQVIKESEE RQEMRHKEVM RLQERRLKME ESKADINRQG 300 MSGLVDAINQ LATSILALAS SSSLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g049030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010505080.1	0.0	PREDICTED: uncharacterized protein LOC104781971 isoform X1
TrEMBL	R0FXE5	1e-154	R0FXE5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010505080.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-123	Trihelix family protein