PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g051380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 301aa    MW: 34200.3 Da    PI: 8.214
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g051380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163961123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  Csa04g051380.1 39 YTCSFCRREFRSAQALGGHMNVH 61
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-63665No hitNo description
PROSITE profilePS5015711.2193966IPR007087Zinc finger, C2H2
PfamPF139122.0E-53962IPR007087Zinc finger, C2H2
SMARTSM003550.00613961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEKPDDFWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFRS AQALGGHMNV  60
HRRDRARLKQ AEDQYLFSKS SSPPEYPSHN DSDDIRETSC YTLVFNSKPN YFKTQHSCVI  120
DLSSSSSLPY LTPRVSSGLP EKQNTSSSSP SFVPSKNSKK IPSSPWPCPN TFVEQKRCDL  180
YEIPVMEGDK KRKIESDVPR IEHKAKLGLG NSTDLSVSMN LVIHQSFPVT AHGRDDEIER  240
GDICKRRRRH ESPSQPSIFI SSLSCKSDII TRKEEIKHKG DRFEDLDLEL RLGTDPRKGN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-133461229superman protein
2l1o_A2e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g051380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505372.10.0PREDICTED: uncharacterized protein LOC104782204
SwissprotO809421e-172ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A178VU741e-170A0A178VU74_ARATH; ZFP10
STRINGXP_010505372.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-153zinc-finger protein 10