PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g052850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YB
Protein Properties Length: 145aa    MW: 15445.1 Da    PI: 4.5966
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g052850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.24.3e-5722118197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdr+lPian+srimkk+lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrkt+ngddllwa+atlGfedy+eplk+yl++yreleg
  Csa04g052850.1  22 VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEG 116
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  Csa04g052850.1 117 DS 118
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5320132IPR009072Histone-fold
SuperFamilySSF471133.11E-4125137IPR009072Histone-fold
PfamPF008081.5E-272892IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.9E-215674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.9E-217593No hitNo description
PRINTSPR006154.9E-2194112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MADNNTPSSP AGDGGESGGG SVREQDRYLP IANISRIMKK ALPPNGKIGK DAKDTVQECV  60
SEFISFITSE ASDKCQKEKR KTVNGDDLLW AMATLGFEDY LEPLKIYLAR YRELEGDSKG  120
SGKSGDGSNR DAGGAVPGEE LPSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4821113294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4821113294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00300DAPTransfer from AT2G38880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g052850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885541e-168AY088554.1 Arabidopsis thaliana clone 7805 mRNA, complete sequence.
GenBankBT0042661e-168BT004266.1 Arabidopsis thaliana clone RAFL15-29-F19 (R20926) putative CCAAT-binding transcription factor subunit (At2g38880) mRNA, complete cds.
GenBankBT0055361e-168BT005536.1 Arabidopsis thaliana clone U20926 putative CCAAT-binding transcription factor subunit (At2g38880) mRNA, complete cds.
GenBankDQ3333051e-168DQ333305.1 Arabidopsis thaliana transcription factor subunit NF-YB1 mRNA, complete cds.
GenBankY137231e-168Y13723.1 Arabidopsis thaliana mRNA for Hap3a transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505542.11e-102PREDICTED: nuclear transcription factor Y subunit B-1
SwissprotQ9SLG04e-94NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA6XB861e-91A6XB86_ARATH; Transcription factor subunit NF-YB1
TrEMBLD7LCC91e-91D7LCC9_ARALL; Uncharacterized protein
STRINGXP_010505542.11e-101(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.57e-77nuclear factor Y, subunit B1