PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g053240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 323aa    MW: 36381.2 Da    PI: 9.508
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g053240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-17104153155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Csa04g053240.1 104 SHYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYTAARAYDRAAIKFRG 153
                     79*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-15104161IPR016177DNA-binding domain
PfamPF008472.9E-9104153IPR001471AP2/ERF domain
PROSITE profilePS5103216.713105161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-16105160IPR001471AP2/ERF domain
CDDcd000183.55E-23105160No hitNo description
SMARTSM003804.9E-29105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MLDLNLGILS THNGDEDCKV PTSIFNQEEE DSNNPSNNSL SLITFGILKR KEDVLILPMP  60
PPPQESELSG AGSEWLNLSS MQRNKQDMLV VKKKSRRGPR SRSSHYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAYTA ARAYDRAAIK FRGFQADINF IVDDYKQDFE KMKNLSKEEF  180
VQTLRRASAS LARGGSKYKY SYMKNDHIHL FHNREWNAAA AKCNEIRKIE GDIKLGAHNK  240
GNEHNDLELS LGISSTSKNI TLKPADDYMG LNRSMTTSLH RKALPVYLPI TETKPLKTVV  300
ASSGFPFIAM INSSSLSTCF DP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g053240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5762760.0AY576276.1 Arabidopsis thaliana AP2 domain transcription factor (SNZ) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505591.10.0PREDICTED: AP2-like ethylene-responsive transcription factor SNZ
SwissprotQ6PV670.0SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ
TrEMBLD7LCG40.0D7LCG4_ARALL; Uncharacterized protein
STRINGXP_010505591.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-161AP2 family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li W,Wang T,Zhang Y,Li Y
    Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(1): p. 175-94
    [PMID:26466661]
  4. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]