PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g054370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 232aa    MW: 27013.5 Da    PI: 4.4479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g054370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13115203281
                     EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS
              B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 
                     +k+l++sdv k  +rl lp++ +ee        +++   + +++++ ++g  +++++k+  +++ ++ vlt+GWkeFv   gL+ + Df++
  Csa04g054370.1 115 KKQLMSSDVDKDqCRLLLPRQLVEETmlpfleeSENLSLGLDVSVYGPDGevQQMKFKI--WNGVRTPVLTSGWKEFVAMYGLEmTSDFIT 203
                     699*******998****************9976333447889********555555555..***********************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.6E-8114219IPR003340B3 DNA binding domain
CDDcd100177.67E-16114212No hitNo description
SuperFamilySSF1019363.92E-14115201IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-15115198IPR015300DNA-binding pseudobarrel domain
PfamPF023627.7E-8116203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAFTQEEDED LHVAAWTLMH LHQAQAQYLN QSPEEDDIDD EVESTPLSQV SQAHQKPSRK  60
RKYADNNQNT MKINKEELFS EETLRLIQAW YRDDPDPLEI FQDAEVTRRF SKPLKKQLMS  120
SDVDKDQCRL LLPRQLVEET MLPFLEESEN LSLGLDVSVY GPDGEVQQMK FKIWNGVRTP  180
VLTSGWKEFV AMYGLEMTSD FITDWMFRHI KTQKICFAID YVRFSLIDPV G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g054370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505731.11e-173PREDICTED: putative B3 domain-containing protein At4g03170
SwissprotQ9ZR141e-83Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLD7MQ421e-85D7MQ42_ARALL; Uncharacterized protein
STRINGXP_010505731.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-86B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]