PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g055550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 257aa    MW: 28159.1 Da    PI: 7.9159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g055550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-1071117354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riNs +++Lr +l  +      K +Ka+ L k+v+ +k+L
  Csa04g055550.1  71 RNHKEAERRRRERINSHLNKLRNILSCN-----SKTDKATLLAKVVQRVKEL 117
                     58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57768117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-1271131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-1271129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-871117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-974123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQPESSDQML YSFLAGNEIG GGGGGYCVSG DYMTTMQSLC GSSSSTSSYY PLAISGIGET  60
MAQDRALAAL RNHKEAERRR RERINSHLNK LRNILSCNSK TDKATLLAKV VQRVKELKQQ  120
TLEISDSDQT LLPSETDEIS VLHFGDYSND GHIIFKASLC CDDRSDLLPD LMEILKSLNM  180
KTLRAEMVTL GGRTRSVLVV AADKEMHGVE SVHFLQNALK SLLERLSKSL MERSSGGGGG  240
GERSKRRRAL DHIIMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g055550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190590.0AK119059.1 Arabidopsis thaliana At2g41130 mRNA for putative bHLH transcription factor (bHLH106), complete cds, clone: RAFL21-40-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505877.10.0PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-153BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1J3GMC51e-162A0A1J3GMC5_NOCCA; Uncharacterized protein
STRINGXP_010505877.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-140bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]