PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g056140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 252aa    MW: 29097.3 Da    PI: 4.9058
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g056140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35491412103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y+++ed++++e+isw+e+g+ fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++ +         weF+++ F+kg++el+++
  Csa04g056140.1  49 FLVKTYQVVEDPTTDEVISWNEDGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNEMFQKGQRELMSN 134
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  Csa04g056140.1 135 IRRRKSQ 141
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-3344138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-5845138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.7E-3746138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.1E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-184972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-188799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-18100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEDAGYHLRC NDNIYNDDEE RLALPIMIGK PTSTAEPQPP PPPSPPPPFL VKTYQVVEDP  60
TTDEVISWNE DGTGFVVWQP AEFARDLLPT LFKHCNFSSF VRQLNTYGFR KVTTIRWEFS  120
NEMFQKGQRE LMSNIRRRKS QHWSRNKSHH QVVPTTTVNQ EDHQPLGIEH HHEDQRSSST  180
SSSFVYTALL DENKCLKNEN ELLSSELGKT KKKCKQLMEL VERYRGEDED ETDEDANEED  240
DGLKLFGVKL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-234313814120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g056140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0294520.0BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505955.10.0PREDICTED: heat stress transcription factor B-3-like
SwissprotO222301e-146HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A178VUP71e-144A0A178VUP7_ARATH; HSFB3
STRINGXP_010505955.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-128heat shock transcription factor B3