PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g056170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 481aa    MW: 52669.8 Da    PI: 8.5864
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g056170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.52.9e-0772105131
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krf 31 
                     s y+GV++++++gr++A+++d  ++n+ ++ k  
  Csa04g056170.1  72 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNkKGK 105
                     57*******************6666666443444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-1373163IPR001471AP2/ERF domain
PROSITE profilePS5103217.79473162IPR001471AP2/ERF domain
SMARTSM003805.8E-2073168IPR001471AP2/ERF domain
PRINTSPR003675.2E-57485IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-9127163IPR016177DNA-binding domain
PRINTSPR003675.2E-5144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MASVSSSDHG PKTEAGCSGG GGGGGGESSE TVAASDQMLL YRGFKKAKKE RGCTAKERIS  60
KMPPCTAGKR SSIYRGVTRH RWTGRYEAHL WDKSTWNQNQ NKKGKQASKL IFSVSFVSSF  120
MVDANIATPV YLGAYDDEEA AARAYDLAAL KYWGPGTLIN FPVTDYTRDL EEMQSLSREE  180
YLASLRRKSS GFSRGIAKYR GLQSRWDASA SRMPGPEYFS NIHYGELLTT LTRWDASASR  240
MPGPEYFSNI HYGAGDDRGT EGDFLGSFCL ERKIDLTGYI KWWGVNKTRQ PESSSKASED  300
AKVEDAGTEL KTLEHTSQAT EPYKVPNLSV LRGTQRKEKE ISSPSSSSAL SILSQSPAYK  360
SLEEKVLKIQ ESSTNENDEN VNRNIINMEK NHGKAIEKPV VSHGVPLGGA ATAAALSLQK  420
SMYPLTSLLT APLLTNYNSL DPLGDPILWT PFLPSGSSHT SEVTKTETSC STYSYIPQEK  480
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g056170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881180.0AY088118.1 Arabidopsis thaliana clone 41462 mRNA, complete sequence.
GenBankBT0259850.0BT025985.1 Arabidopsis thaliana At2g41710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505963.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLD7LHA70.0D7LHA7_ARALL; Uncharacterized protein
STRINGXP_010505961.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein