PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g060600.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 278aa MW: 31736.7 Da PI: 8.2209

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g060600.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.2	1.7e-49	22	145	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 pGfrFhPtdeel+ +yL++kve+k+++l e ik++diyk++PwdL + +a+ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s k Csa04g060600.1 22 PGFRFHPTDEELLGFYLRRKVENKPIKL-ELIKQIDIYKFDPWDLTRVSSAGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYS-KL 114 9*************************.99**********977778999**********************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 vglkk+Lv+y g+a kg+ktdW+mhe+rl Csa04g060600.1 115 DCVGLKKSLVYYLGSAGKGTKTDWMMHEFRL 145 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.491	20	169	IPR003441	NAC domain
SuperFamily	SSF101941	2.88E-55	21	168	IPR003441	NAC domain
Pfam	PF02365	3.2E-25	22	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSGEGNLDRD HEKEEEEGAP LPGFRFHPTD EELLGFYLRR KVENKPIKLE LIKQIDIYKF 60 DPWDLTRVSS AGEKEWYFFC MRGRKYRNSV RPNRVTGSGF WKATGIDKPV YSKLDCVGLK 120 KSLVYYLGSA GKGTKTDWMM HEFRLPSTTK TDSPAQQAEV WTLCRIFKRV TSHRNPTIVP 180 PNRKPVITLT DTCSKTSSLD SDHTSHRVVD SLSHEPPLQP HNHPYWNQHT VAFNQPAYTS 240 CNDNNLLSFW NVNGGDFIGD SASWDELRSV IDGNTKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-52	22	175	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-52	22	175	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-52	22	175	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-52	22	175	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-52	22	175	22	174	NAC domain-containing protein 19
3swm_B	4e-52	22	175	22	174	NAC domain-containing protein 19
3swm_C	4e-52	22	175	22	174	NAC domain-containing protein 19
3swm_D	4e-52	22	175	22	174	NAC domain-containing protein 19
3swp_A	4e-52	22	175	22	174	NAC domain-containing protein 19
3swp_B	4e-52	22	175	22	174	NAC domain-containing protein 19
3swp_C	4e-52	22	175	22	174	NAC domain-containing protein 19
3swp_D	4e-52	22	175	22	174	NAC domain-containing protein 19
4dul_A	4e-52	22	175	19	171	NAC domain-containing protein 19
4dul_B	4e-52	22	175	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g060600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493587	0.0	AB493587.1 Arabidopsis thaliana At2g43000 mRNA for hypothetical protein, partial cds, clone: RAAt2g43000.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010506152.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	0.0	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	D7LJF2	0.0	D7LJF2_ARALL; ANAC042
STRING	XP_010506152.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	0.0	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]