PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g063060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 648aa    MW: 70959.3 Da    PI: 5.7351
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g063060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.42.8e-932746462374
            GRAS   2 velLlecAeavss..gdle......laqalLarlsel..aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                     +e+L+++Ae + +  + ++      laq +Larl+++   s++   +p+qR+a++++eAL + +++         ++s  +++n + ++aa++ f
  Csa04g063060.1 274 IEQLFNAAELIGTngN-NNngdhtvLAQGILARLNHHlnTSNHNhkSPFQRAASHIAEALLSLIHND--------SSSLITPENLILRIAAYRSF 359
                     5788888888866431.223445569**********98733333347******************93........3333345579********** PP

            GRAS  85 sevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLas......RpegppslRiTgvgspesg..skeeleetgerLakfA 169
                     se+sP+l+f ++taNq Ile+ + +  +r+HiiDfd+++G+QW +L+q+Las      R++ + sl++T++++p s+  ++ el+ t+e+L+ fA
  Csa04g063060.1 360 SETSPFLQFVNFTANQSILESCNDSgfDRIHIIDFDVGYGGQWSSLMQELASgggggrRRNRASSLKLTVFAPPPSTvsDEFELRFTEENLKTFA 454
                     **********************99888************************8444443447799*********9988899*************** PP

            GRAS 170 eelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                      e++vpfe+++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+
  Csa04g063060.1 455 GEVKVPFEIELLSIELLLNPAYWPLSLRSseKEAIAVNLPINSVVSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQ 541
                     ************88888888999998887779********9655554........5677************************************ PP

            GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                     y+++l++sl+a+   +++++++vEr++++++i++++++++++     e+   Wr+ ++++GF+p++ls++a++qa++ll++ +++g++ve+++ s
  Csa04g063060.1 542 YHTSLLESLDAN---QNQDDSSVERFWVQPSIEKLLMKRQRW----IERSPPWRSLFTQCGFSPASLSQTAEAQAECLLQRNPVRGFHVEKRQSS 629
                     ************...89************************9....89999******************************************** PP

            GRAS 358 lvlgWkdrpLvsvSaWr 374
                     lv++W++++Lv+vSaW+
  Csa04g063060.1 630 LVMCWQRKELVTVSAWK 646
                     ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.399247626IPR005202Transcription factor GRAS
PfamPF035149.6E-91274646IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGLSSSS SSFYPDSHKI WLNNQEDKTG VREAKQEEDL GYVVGSFLPE  60
PTSVLDALRS PSPLASHSST TTTLSSSHGG GTTVTATAVT PGDDNKCSHQ MGLDDLDGVL  120
SASSPGQEQS ILRLIMDPGS AFGVFDPGFG FGSASSCPVT DDNSNPLCSF PFQEVTNTTE  180
ALINPTTNHC LFSSNPPLSP PAKRFNSGSH HHQPVFPFSD PDPVHDPVRR QHQFQFPFQF  240
HQQQIPSPSS SSAAVAMVPV PSPGMAGDDQ SVIIEQLFNA AELIGTNGNN NNGDHTVLAQ  300
GILARLNHHL NTSNHNHKSP FQRAASHIAE ALLSLIHNDS SSLITPENLI LRIAAYRSFS  360
ETSPFLQFVN FTANQSILES CNDSGFDRIH IIDFDVGYGG QWSSLMQELA SGGGGGRRRN  420
RASSLKLTVF APPPSTVSDE FELRFTEENL KTFAGEVKVP FEIELLSIEL LLNPAYWPLS  480
LRSSEKEAIA VNLPINSVVS GYLPLILRFL KQISPNVVVC SDRGCDRNDA PFPNAVIHAL  540
QYHTSLLESL DANQNQDDSS VERFWVQPSI EKLLMKRQRW IERSPPWRSL FTQCGFSPAS  600
LSQTAEAQAE CLLQRNPVRG FHVEKRQSSL VMCWQRKELV TVSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2835664680375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g063060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506453.10.0PREDICTED: scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A384KUR00.0A0A384KUR0_ARATH; LOM1
TrEMBLB7ZWR80.0B7ZWR8_ARATH; At2g45160
STRINGXP_010506453.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]