PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g063330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 130aa    MW: 14705.8 Da    PI: 5.4516
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g063330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26049.71.1e-1525646100
          DUF260  46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                     l +lp ++r da+ +l+yeA ar+rdPvyG+vg++++lq+q+++l+aela+++++
  Csa04g063330.1   2 LLRLPLHKRFDAVVTLCYEAMARLRDPVYGSVGHLFSLQHQVMNLQAELAHVQAR 56 
                     667899********************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.401157IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-14154IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MLLRLPLHKR FDAVVTLCYE AMARLRDPVY GSVGHLFSLQ HQVMNLQAEL AHVQARLSTF  60
QHFPLQSPQL PPIDLAHNNE YPMEQPSNLD SAWEEEHLLQ GGIEDGEFQE LAMQYISRYL  120
PAVKLPAGT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g063330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738561e-108AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506483.12e-91PREDICTED: LOB domain-containing protein 19
SwissprotO221327e-72LBD19_ARATH; LOB domain-containing protein 19
TrEMBLR0HYN68e-72R0HYN6_9BRAS; Uncharacterized protein
STRINGXP_010506483.17e-91(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-74LOB domain-containing protein 19