PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g064800.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BES1

Protein Properties

Length: 93aa MW: 10431.2 Da PI: 4.5655

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g064800.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	30.1	1.6e-09	64	90	1	27
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaa 27 ggs+r+++ +E+E++k+RER+RRai+a Csa04g064800.1 64 GGSRRSRPLEEKERTKLRERHRRAITA 90 689***********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MATDMHKLLG TSEEDDDEDM DMDVKEEDDD HRNRGTTRAA SGSSDEEFMF QQSMQDQVGT 60 PGGGGSRRSR PLEEKERTKL RERHRRAITA SS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g064800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004665	2e-84	AC004665.3 Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence.
GenBank	AK227323	2e-84	AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
GenBank	CP002685	2e-84	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010506568.1	3e-54	PREDICTED: beta-amylase 7-like
Refseq	XP_010508098.1	3e-54	PREDICTED: beta-amylase 7
Refseq	XP_019100643.1	3e-54	PREDICTED: beta-amylase 7-like
Swissprot	O80831	3e-36	BAM7_ARATH; Beta-amylase 7
TrEMBL	R0HB94	1e-37	R0HB94_9BRAS; Beta-amylase
STRING	XP_010506568.1	1e-53	(Camelina sativa)
STRING	XP_010508098.1	1e-53	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	9e-14	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]