PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g065370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 304aa    MW: 34081 Da    PI: 5.0237
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g065370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-18118168256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdps    r +r +lg+f taeeAa  +++a+ +l+g+
  Csa04g065370.1 118 KYRGVRQRP-WGKYAAEIRDPS----RrTRLWLGTFATAEEAAIGYDRAAIRLKGH 168
                     8********.**********84....34*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-31118174No hitNo description
SuperFamilySSF541715.17E-20118175IPR016177DNA-binding domain
SMARTSM003806.3E-35118181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-29118174IPR001471AP2/ERF domain
PROSITE profilePS5103221.878118175IPR001471AP2/ERF domain
PfamPF008472.0E-11118168IPR001471AP2/ERF domain
PRINTSPR003675.8E-10119130IPR001471AP2/ERF domain
PRINTSPR003675.8E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPQRPNAYGA NSFVIALSSS RERKVKYTVH RKITSLPFNG FPKTVKIIVT DPCATDSSSD  60
DEEYDNKSLP PRVKRFVEEI RFCNDDGGGG DKLERKVKSK SETAENGCDL VVKPTVVKYR  120
GVRQRPWGKY AAEIRDPSRR TRLWLGTFAT AEEAAIGYDR AAIRLKGHNA QTNFLTPPPP  180
PPPPPVIDFE TVSGCDSARE SQISSSLCSP TSVLRFGHNE ETEFRTEPLK QEEEALSSDP  240
FFLPDLFRSG DCFWDSKFTP DPLFLLDETT HNNTVSESFP LGVIGDFSSW DVDEFFQDHL  300
FDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21119174359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-21119174662ATERF1
3gcc_A5e-21119174662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g065370.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506631.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
SwissprotO823391e-140CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLR0FY071e-149R0FY07_9BRAS; Uncharacterized protein
STRINGXP_010506631.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-137cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]