PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g066220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SBP

Protein Properties

Length: 338aa MW: 37758.8 Da PI: 6.1316

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g066220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.6	7.6e-43	11	88	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Csa04g066220.1 11 ACQVENCEADLSRVKDYHRRHKVCEMHSKATSAIVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 88 5**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.2E-33	8	73	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.59	9	86	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.72E-40	11	90	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.2E-31	12	85	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDLSLCXNRA ACQVENCEAD LSRVKDYHRR HKVCEMHSKA TSAIVGGIMQ RFCQQCSRFH 60 VLQEFDEGKR SCRRRLAGHN KRRRKTNPEP GANGNPSDDQ SSNYLLISLL KILSNMHTTR 120 SDHTGDQDLM SHLLKSLVSH AGEQLGKNLV ELLLQGGSQG SLNIGNSGLL AIEGAPQEDS 180 KQLSVNVPEI PRQELYANGT ATENRSEKQV KMNDFDLNDI YIDSDDTDIE RSPPPTNPAT 240 SSLDYPSWIH QSSPPQTSRN SDSASDQSPS SSSEDAQMRT GRIVFKLFGK EPNDFPVVLR 300 GQILDWLSHS PTDMESYIRP GCIVLTIYLR QAETAWEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-33	12	85	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g066220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC815948	0.0	KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010506733.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	V4N2D6	0.0	V4N2D6_EUTSA; Uncharacterized protein
STRING	XP_010506733.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]