PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g067930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 426aa    MW: 45083.6 Da    PI: 9.2861
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g067930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-124669427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                     +C+f+++tGtCk+G++CkF+H++
  Csa04g067930.1 46 LPCQFYLKTGTCKFGASCKFHHPK 69
                    69********************96 PP
2zf-CCCH36.49e-1291115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C+++++tG+Ck+G +CkF+H++
  Csa04g067930.1  91 ENECSYYLKTGQCKFGITCKFHHPQ 115
                     678********************97 PP
3zf-CCCH382.8e-12247273127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G +CkF+H++
  Csa04g067930.1 247 PGEPECQYYLKTGDCKFGTSCKFHHPR 273
                     5799*********************96 PP
4zf-CCCH32.61.4e-10294319227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +  +C f+ ++G+Ck+G++CkF H++
  Csa04g067930.1 294 GVQRCTFYVQNGFCKFGSTCKFDHPM 319
                     6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.7E-64269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2914270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-64370IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-104569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-54768IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-588115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.99588116IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-592116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-494114IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356246274IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9248273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6250275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5252274IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23292320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6294323IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8294319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5298318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLAIPSMAHN LLKLLPTGAL LMPIPVSKVE ATVRATGQYP ERFGELPCQF YLKTGTCKFG  60
ASCKFHHPKN AGGSMSHVPL NIYGYPVREG ENECSYYLKT GQCKFGITCK FHHPQPAGTT  120
VPPPPPPPPA SAPQFYPSVQ SLMPDQYGGP SSSLRVARTL LPGSYMQGAY GPMLLTPGVV  180
PIPGWSPYSA PVSPALSPGA QHAVGATSLY GVTQLSSTSP SLPGVYPSLS SPTGVIQKEQ  240
AAFPERPGEP ECQYYLKTGD CKFGTSCKFH HPRDRVPPRA NCILSPIGLP LRPGVQRCTF  300
YVQNGFCKFG STCKFDHPMG TIRYNPSASS LADAPVAPYP VSSLLGALAA APSSSSTELI  360
TGGAKDPYLT GLPTSRSTSS ISAGLIFSQS GGSIPFSDLQ LSSQTSLPLT GSRITRQGRE  420
IRRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g067930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507840.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_010507841.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGXP_010507789.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein