PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g067960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 336aa    MW: 37781.5 Da    PI: 5.6608
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g067960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.3e-061242434
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                    r C+ +++  +  +C+ ++  lC  C  + H
  Csa04g067960.1 12 RLCDYCDSSVALVYCKADSAKLCLACDKQVH 42
                    68*************************9999 PP
2zf-B_box17.58.5e-065685534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +++ + +lfCe+ ++ lC++C  ++H
  Csa04g067960.1 56 LCDSCHDSPSSLFCESERSVLCQNCDWQHH 85
                    7*************************9955 PP
3CCT60.36.6e-21289332144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a
  Csa04g067960.1 289 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 332
                     899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-14956IPR000315B-box-type zinc finger
PROSITE profilePS501199.485956IPR000315B-box-type zinc finger
CDDcd000217.50E-61256No hitNo description
PROSITE profilePS501199.3575298IPR000315B-box-type zinc finger
CDDcd000211.59E-75687No hitNo description
SMARTSM003360.595790IPR000315B-box-type zinc finger
PROSITE profilePS5101714.743289331IPR010402CCT domain
PfamPF062038.2E-15289331IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMEKEEEEGH RRLCDYCDSS VALVYCKADS AKLCLACDKQ VHVANQLFGK HFRSLLCDSC  60
HDSPSSLFCE SERSVLCQNC DWQHHTASST SLQSRRPFEG FTGCPSVPEL LSIVGLDDLS  120
PDSGLLWDQT PPEIISLNDL LVSGGSDTHN FRATDVPPLP KNRHATCGKY KDEMIRQLRG  180
LARSEPSCLK FEAASDAEID AGFQFLAPDL FPTCELESGM KWFDQQDEDF PYCSLLKNLS  240
GSVDKPENVD RDSSVMVPVA DSFNRCEEDN VMVPLCSTTA TREINSLERN SALSRYKEKK  300
KSRRYEKHIR YESRKVRAES RTRIRGRFAK AADPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g067960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935980.0AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890.
GenBankBT0234130.0BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506829.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822560.0COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLR0FWW40.0R0FWW4_9BRAS; Uncharacterized protein
STRINGXP_010506829.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]