PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05500s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 128aa    MW: 14786.2 Da    PI: 10.3214
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05500s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind51.62.5e-16497299
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH.HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
    HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeee.fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97
                    F   +ye++ed+++++lisw++++n fv++ +ee + +k+L   F   ++  F+  L  YgF++vk++ +     +   eF+++ F kg+ + l+++
  Csa05500s010.1  4 FYVDIYELVEDPSTDSLISWNKRNNGFVMCSQEErIRSKIL-LPFNCGKLCEFLSELSYYGFRRVKKKAAG----SGKLEFRNEDFVKGQPKRLKDM 95
                    88899*****************99****9986651666665.57*************************98....778***************9987 PP

                    XX CS
    HSF_DNA-bind 98 kr 99
                      
  Csa05500s010.1 96 ML 97
                    65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-26198IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-19395IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.91E-20395IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.1E-16495IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-7427IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-75567IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGSFYVDIYE LVEDPSTDSL ISWNKRNNGF VMCSQEERIR SKILLPFNCG KLCEFLSELS  60
YYGFRRVKKK AAGSGKLEFR NEDFVKGQPK RLKDMMLKAF RKNRAKLRAQ QAAKDAVDRL  120
QLQSLHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05500s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449325.26e-78PREDICTED: heat stress transcription factor A-4a-like
TrEMBLQ8L7H23e-49Q8L7H2_ARATH; Winged-helix DNA-binding transcription factor family protein
STRINGXP_010449325.15e-78(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.14e-54HSF family protein