PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05952s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 113aa    MW: 12582.4 Da    PI: 6.9365
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05952s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR54.81.9e-173977240
             TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                    ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  Csa05952s010.1 39 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 77
                    689**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-193879IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.90139113IPR005172CRC domain
PfamPF036384.4E-134176IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
NETREDADQD VPVEPALQEL NLSSPKKKRV KLDSGEGDSC KRCNCKKSKC LKLYCECFAA  60
GVYCIEPCSC IDCFNKPIHE DTVLATRKQI ESRNPLAFAP KVIRNSDSVL ETG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12431PKKKRVKL
22432PKKKRVKLD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05952s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615393e-65AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBankCP0026873e-65CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973373e-65Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440393.15e-74PREDICTED: protein tesmin/TSO1-like CXC 2
RefseqXP_019089594.11e-74PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_019089595.11e-74PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
SwissprotF4JIF52e-71TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A178UVP45e-69A0A178UVP4_ARATH; TCX2
TrEMBLA0A1P8B4Y74e-69A0A1P8B4Y7_ARATH; TESMIN/TSO1-like CXC 2
TrEMBLA0A1P8B4Z64e-69A0A1P8B4Z6_ARATH; TESMIN/TSO1-like CXC 2
TrEMBLR0F1B15e-69R0F1B1_9BRAS; Uncharacterized protein
STRINGXP_010440393.12e-73(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151961015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-55TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]