PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g001910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 351aa    MW: 39016.9 Da    PI: 6.7519
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g001910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.7e-33182238258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYGqK vk+s+fpr+YYrCt+a+C+vkk+vers +dp++v++tYeg+H+h
  Csa05g001910.1 182 EDGYRWRKYGQKAVKNSPFPRGYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 238
                     8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381303.0E-1141350IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.6E-33166240IPR003657WRKY domain
SuperFamilySSF1182904.18E-28173239IPR003657WRKY domain
PROSITE profilePS5081131.009176241IPR003657WRKY domain
SMARTSM007745.5E-38181240IPR003657WRKY domain
PfamPF031062.3E-25182238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEFTDFSKTS YYYPSSQGVW DFGDLAAAER NNNSLGFMEL LGSQPHHHDF ATTTVSPHSL  60
LIETPQTQTQ TQLSTKLSSP VSTILQAPPP SDKAASKVES FCSDQFSINP PATPNSSSIS  120
SASSEAVNEE KPKREDNEVE EEEKSHHHNT KKQLKAKKNN NKKREREARV AFMTKSEVDH  180
LEDGYRWRKY GQKAVKNSPF PRGYYRCTTA SCNVKKRVER SFRDPSTVVT TYEGQHTHIS  240
PLTSRPISTG GGFYGSSGAA SNLGNGGCFG FPLETSTLIS PQFQQLVHYH QQQQQQELLS  300
CFGGVGEYLD THGNDEFGDD DDRVKRSRGL VNKDNGLLQD VVPSHMLKEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26171241777Probable WRKY transcription factor 4
2lex_A2e-26171241777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g001910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507912.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-164WRK23_ARATH; WRKY transcription factor 23
TrEMBLR0HQZ60.0R0HQZ6_9BRAS; Uncharacterized protein
STRINGXP_010507912.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-124WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]