PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g002060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 1009aa    MW: 111889 Da    PI: 6.5647
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g002060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22.1e-42154231178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Csa05g002060.1 154 ACQVENCEADLSKVKDYHRRHKVCEMHSKATSAIVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 231
                     5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-34149216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.633152229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-39154233IPR004333Transcription factor, SBP-box
PfamPF031108.1E-31155228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MEARIEGEPQ QHFYGFRAVD LSSVGKKSVE WDLNDWKWDG DLFVATHLNH PGGVVATETT  60
GRQFFPLGNS SNSSSSCSDE GNNSELMVRS STREVEKKRR AVAIEGDHNG GGKGLTLKLG  120
DNGCDLNGER EGSCAAKKTK FGGGGAGGVT NRAACQVENC EADLSKVKDY HRRHKVCEMH  180
SKATSAIVGG IMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PEPGANGNPS  240
DDQSSNYLLI SLLKILSNMH TTRSDNTADQ DLMSHLLKSL VSHAGEQLGK NLVELLLQGG  300
SLGSLNIGNS GLLAIEGAPQ EDSKQLSVNV PEIPRQELYA NGTATENRSE KQVKMNDFDL  360
NDIYIDSDDT DIERSPPPTN PATSSLDYPS WIHQSSPPQT SRNSDSASDQ SPSSSSEDAQ  420
MRTGRIVFKL FGKEPNDFPV ALRGQILDWL SHSPTDMESY IRPGCIVLTV YLRQAETAWE  480
ELSEDLGFSL RKLLDLSDGP LWTTGWIYVR VQNQLAFVYN GQVVVDTSLP LKSHDYSHII  540
SVKPLAVAAT GKAQFTVKGI NLRRRGTRLL CAVEGKYLIQ ETAHEEDDDL KENNGSVECV  600
NFSCDMPITS GRGFMEIEDQ GLSSSFFPFL VVEDDDVCSE IRILETTLEF TGTDSAKEAM  660
DFIHEIGWLL HRSKLGESDP NPDVFPLIRF QWLIEFSVDR EWCAVIRKLL NMFFDGAVGD  720
FSSSSNATLS ELCLLHRAVG IKAWKTSRDS TGFTPEDYAR LRGHFSYIHL IQRKINKKSA  780
TEDHVVVNIP VSFADREQKE PKSGPVTSAL EITQINQLPC KLCDHKLVYG TARRSVAYRP  840
AMLSMVAIAA VCVCVALLFK SCPEVGIKAW KTSRDSTGFT PEDYARLRGH FSYIHLIQRK  900
INKKSATEDH VVVNIPVSFA DREQKEPKSG PVTSALEITQ INQLPCKLCD HKLVYGTARR  960
SVAYRPAMLS MVAIAAVCVC VALLFKSCPE VLYVFQPFRW ELLDYGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-32145228184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g002060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507933.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A1J3IQZ60.0A0A1J3IQZ6_NOCCA; Squamosa promoter-binding-like protein 1
STRINGCagra.16630s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]