PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g002930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 157aa    MW: 18355 Da    PI: 7.8368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g002930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.46e-151213610128
             NAM  10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                     +de+++  yL++kv+g+ +   ++ ++++  ++y+ ePw Lp+        + +ew++  kr++ky+   +++ +  +g W       +vls+ +
  Csa05g002930.1  12 SDEDIIEGYLRPKVNGEAIANPRFiVDNMeeELYTREPWLLPQptD--PilNPREWFYLGKRNRKYR---QAEGVHCEGAWILIQGRSPVLSEeS 101
                     79****************77656524444448*********96332..233778***********96...44557779****8888888888746 PP

             NAM  97 gelvglkktLvfy...kgrapkgektdWvmheyrl 128
                     ge +g    + +    k++++    ++W+m eyrl
  Csa05g002930.1 102 GEIIGATMRFRYCfrnKNDKSAMAYSNWFMREYRL 136
                     6677777777766655556666779********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.1343155IPR003441NAC domain
PfamPF023656.0E-910136IPR003441NAC domain
SuperFamilySSF1019412.75E-2312153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVSEGEVRSR ISDEDIIEGY LRPKVNGEAI ANPRFIVDNM EEELYTREPW LLPQPTDPIL  60
NPREWFYLGK RNRKYRQAEG VHCEGAWILI QGRSPVLSEE SGEIIGATMR FRYCFRNKND  120
KSAMAYSNWF MREYRLCDKS KPYNTPHVLC KITCNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g002930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512826.11e-114PREDICTED: NAC transcription factor NAM-B2
TrEMBLR0FSJ71e-101R0FSJ7_9BRAS; Uncharacterized protein
STRINGXP_010512826.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.14e-63NAC domain containing protein 27