PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g004110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 653aa    MW: 71575.9 Da    PI: 5.4207
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g004110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3051.8e-932786513374
            GRAS   3 elLlecAeavss....gdle.......laqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                     e+L+++Ae + +    +  +       laq +Larl+++   s++++p+qR+a+++ eAL + +++         +p+  +++n + ++aa++ f
  Csa05g004110.1 278 EQLFNAAELIGTngnnN--NnngdhtvLAQGILARLNHHlnTSNHKSPFQRAASHISEALLSLIHN-------DSSPTLITPENLILRIAAYRSF 363
                     56666666665432211..123444469**********98788889*******************9.......34455556688*********** PP

            GRAS  85 sevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLas.....RpegppslRiTgvgspesg..skeeleetgerLakf 168
                     se+sP+l+f ++taNq Ile+  ++    +r+HiiDfd+++G+QW +L+q+Las     R++ + sl++T++++p s+  ++ el+ t+e+L+ f
  Csa05g004110.1 364 SETSPFLQFVNFTANQSILEESCNNdsgfDRIHIIDFDVGYGGQWSSLMQELASggggrRRNRASSLKLTVFAPPPSTvsDEFELRFTEENLKTF 458
                     ********************9887778889***********************744443557899*********9988899************** PP

            GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                     A el+vpfe+++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al
  Csa05g004110.1 459 AGELKVPFEIELLSIELLLNPAYWPLSLRSseKEAIAVNLPINSVVSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHAL 545
                     *************88888888999998887779********9655554........5677*********************************** PP

            GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                     +y+++l++sl+a+   +++++++vEr++++++i++++++++++     e+   Wr+ ++++GF+p+ ls++a++qa++ll++ +++g++ve+++ 
  Csa05g004110.1 546 QYHTTLLESLDAN---QNQDDSSVERFWVQPSIEKLLMKRQRW----IERSPPWRSLFTQCGFSPAGLSQTAEAQAECLLQRNPVRGFHVEKRQS 633
                     *************...89************************9....89999******************************************* PP

            GRAS 357 slvlgWkdrpLvsvSaWr 374
                     slv++W++++Lv+vSaW+
  Csa05g004110.1 634 SLVMCWQRKELVTVSAWK 651
                     *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.442250631IPR005202Transcription factor GRAS
PfamPF035146.3E-91278651IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGLSSSS SSSFYPDSHK IWFTNQEDKT GVREAKQEED LLGYVVGSFL  60
PEPTSVLDAL RSPSPLASHS STTTTLSSSH GGGGTTVTAT AVTPGDDNNN KCSHQMGLDD  120
LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSAS SGPVTDDNSN PLCSFPFQDV  180
TNPSEALINP TTNFSNPPLS PPAKRFNSGS HHHQQQPVFP FSDPDPVHDP VRRQHQFQFP  240
FQFHQQQQIP SSSAAVAMVP VPVPSQGMAG DDQSVIIEQL FNAAELIGTN GNNNNNNGDH  300
TVLAQGILAR LNHHLNTSNH KSPFQRAASH ISEALLSLIH NDSSPTLITP ENLILRIAAY  360
RSFSETSPFL QFVNFTANQS ILEESCNNDS GFDRIHIIDF DVGYGGQWSS LMQELASGGG  420
GRRRNRASSL KLTVFAPPPS TVSDEFELRF TEENLKTFAG ELKVPFEIEL LSIELLLNPA  480
YWPLSLRSSE KEAIAVNLPI NSVVSGYLPL ILRFLKQISP NVVVCSDRGC DRNDAPFPNA  540
VIHALQYHTT LLESLDANQN QDDSSVERFW VQPSIEKLLM KRQRWIERSP PWRSLFTQCG  600
FSPAGLSQTA EAQAECLLQR NPVRGFHVEK RQSSLVMCWQ RKELVTVSAW KC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2736065180375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g004110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508207.10.0PREDICTED: scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A384KUR00.0A0A384KUR0_ARATH; LOM1
TrEMBLB7ZWR80.0B7ZWR8_ARATH; At2g45160
STRINGXP_010508207.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]