PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g005850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 619aa    MW: 69885 Da    PI: 8.6248
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g005850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.9e-124093248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     ++W t+E++ll++avk++G g+W+++a ++           ++++ck+++++++
   Csa05g005850.1 40 QAWGTWEELLLACAVKRHGFGDWDSVATEVRsrsstlsDLVSANNCKHKYRDLK 93
                     68*****************************999888855689*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-532100IPR009057Homeodomain-like
PROSITE profilePS500906.2493493IPR017877Myb-like domain
SuperFamilySSF466891.2E-63597IPR009057Homeodomain-like
SMARTSM007175.7E-63895IPR001005SANT/Myb domain
PfamPF002492.2E-114093IPR001005SANT/Myb domain
CDDcd001676.06E-74193No hitNo description
Gene3DG3DSA:1.20.920.101.5E-15264395IPR001487Bromodomain
SMARTSM002977.0E-20270379IPR001487Bromodomain
SuperFamilySSF473701.83E-17272378IPR001487Bromodomain
PfamPF004391.5E-10284360IPR001487Bromodomain
CDDcd043693.42E-14284374No hitNo description
PROSITE profilePS5001412.264289352IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MNVVDDTNNN NEYTYTDDCI EEDDDNNNIN NTNKESQTQQ AWGTWEELLL ACAVKRHGFG  60
DWDSVATEVR SRSSTLSDLV SANNCKHKYR DLKRRFHEKE KTDAAATTEE EDEKVGNNNI  120
TWLEQLRNLR VAELRREVER YDVSILSLQL KVKKLEEERE EEKPDLEEEM MKTERSENDG  180
SETDHREKAE ESDRENGSMN ESNSTETVRE DERVGGDEPD DVNPDPVSKD TAEEERSVSR  240
GSEASHSDES GTSERKWKRK RRKQGGSDEI RSDDESKSQP LIGLLDLIRS HPRGSLFERR  300
LRSQEAKDYK SMVKQHLDIE TIQRKFKQGC YDSSTLTFYR DLQLLFTNAI VFFPLSSAES  360
MAAHELRAVV FQEMRKETGE SGPRLIINRE VSAMDSGKAD AETSDSSLSR ENKSSAPLVV  420
CKKRTSVSTK ASSFSQKEET KEETLSEEKE NIVTVVRSSR RANKVVAAAI SNITNKGKSK  480
NKQKQTETKT NSSNDNSSKQ ETGKTEKKMI SSDKKKSVAD FLKRLTKNSP QKESKDQNKS  540
SGGGKKDIKT KPRELRSSRV GKKKAEVENT PVKRAPGRPQ KKTTEAGATA TASATGKRGR  600
DTGSTGKDNK QPKKRIRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254262RKWKRKRRK
2257262KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g005850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207070.0AY120707.1 Arabidopsis thaliana unknown protein (At2g44430) mRNA, complete cds.
GenBankBT0096640.0BT009664.1 Arabidopsis thaliana At2g44430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508295.10.0PREDICTED: uncharacterized protein LOC104784894
TrEMBLO648770.0O64877_ARATH; At2g44430
STRINGXP_010508295.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein