PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g008920.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 268aa MW: 29994.1 Da PI: 9.7402

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g008920.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.1e-31	52	105	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ Csa05g008920.1 52 PRLRWTPDLHLTFVRAVQRLGGPHRATPKLVLQMMNLKGLSIAHVKSHLQMYRS 105 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-28	48	106	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.447	48	108	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.5E-22	52	107	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.91E-14	52	106	IPR009057	Homeodomain-like
Pfam	PF00249	9.6E-10	53	104	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MAGPGTSPPG ICYTYLDLNR EEKNNEEESS VEDEDQVTSS NNVRQYVRSN MPRLRWTPDL 60 HLTFVRAVQR LGGPHRATPK LVLQMMNLKG LSIAHVKSHL QMYRSKKLEP SLSRHDFGAF 120 MSGQRSYLID SRCIPYGGDL RHASNSKTVP SRVLNQDAII TNLGGNFLMR PSSWLSGLCT 180 YNQDSIKNKT LPLLEIRKTI NEKRVRDEEV SSSVKRLKSI SGDGIQLPEI GICRQKPTDD 240 INTMLSLSLF STSSGDRNIA STNITER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	53	107	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	53	107	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	53	107	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	53	107	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g008920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074640	0.0	AY074640.1 Arabidopsis thaliana F14N22.7/F14N22.7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508544.1	0.0	PREDICTED: putative two-component response regulator ARR20
TrEMBL	D7LIV0	1e-144	D7LIV0_ARALL; Myb family transcription factor
STRING	XP_010508544.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	1e-128	G2-like family protein