PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g009930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 476aa    MW: 52081.2 Da    PI: 9.3119
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g009930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.2e-13116172155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Csa05g009930.1 116 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 172
                     57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-9116172IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-14116181IPR016177DNA-binding domain
PROSITE profilePS5103218.518117180IPR001471AP2/ERF domain
SMARTSM003805.3E-19117186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-12117181IPR001471AP2/ERF domain
PRINTSPR003675.1E-5118129IPR001471AP2/ERF domain
PRINTSPR003675.1E-5162182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
KEESNKVEFF AFLSLFASTV TSSVLLSRSA PRVWFWGKKG SPIMASVSSS DHGPKTEAGC  60
SGGGGGGGGG ESSETVAASD QMLLYRGFKK AKKERGCTAK ERISKMPPCT AGKRSSIYRG  120
VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ GAYDDEEAAA RAYDLAALKY WGPGTLINFP  180
VTDYTRDLEE MQSLSREEYL ASLRRYPFGR KSSGFSRGIA KYRGLQSRWD ASASRMPGPE  240
YFSNIHYGAG DDRGTEGDFL GSFCLERKID LTGYIKWWGV NKTRQPESSS KASEDAKVED  300
AGTELKTLEH TSQATEPYKV PNLGVLRGSQ RKEKEISSPS SSSALSILSQ SPAYKSLEEK  360
VLKIQESSTS ENDENANRNI INMEKNHGKA IEKPVVSHGV PLGGAAASAA LSLQKSMYPL  420
TSLLTAPLLT NYNTLDPLGD PILWTPFLPS GSSHTSEVTK TETSCSTYSY IPQEK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g009930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187890.0AK118789.1 Arabidopsis thaliana At2g41710 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL21-12-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505961.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLD7LHA70.0D7LHA7_ARALL; Uncharacterized protein
STRINGXP_010505961.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.20.0AP2 family protein