PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g012730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 233aa    MW: 27156.8 Da    PI: 4.589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g012730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-13115204282
                     EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
              B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                     +k+l+ sdv k  +rl lp++ +ee        ++++  + +++++ ++g  +++++k+  +++ ++ vlt+GWkeFv   gLk + Df++ 
  Csa05g012730.1 115 KKQLILSDVDKYqSRLLLPRQLVEETmlpfleeSENPSLGLDVSVYGPDGevQQMKFKI--WNGVRTPVLTSGWKEFVANYGLKmTSDFITV 204
                     588999999998799****************9977888999*********555555555..***********************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.75E-15108208No hitNo description
SMARTSM010195.0E-9114219IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-15115207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-15115212IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-8116204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAFTQEEDED LHVAAWTLIY IHQAQAQYLN QSPEEDDIDD EVESTPLSQV SQAHQKPSRK  60
RKYADNNQNT MKINKEELFS EETLRLIQVW YRDDPDPVEI FKDAEVTRRF SKPLKKQLIL  120
SDVDKYQSRL LLPRQLVEET MLPFLEESEN PSLGLDVSVY GPDGEVQQMK FKIWNGVRTP  180
VLTSGWKEFV ANYGLKMTSD FITVWMFRHI MTQKICFAID YVRFSLIDQP VG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g012730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505731.11e-149PREDICTED: putative B3 domain-containing protein At4g03170
SwissprotQ9ZR141e-82Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLD7MQ422e-86D7MQ42_ARALL; Uncharacterized protein
STRINGXP_010508908.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-85B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]