PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g013080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 857aa    MW: 96159.3 Da    PI: 8.0092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g013080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.6e-175398147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++e de l ++v++ G+++W++I+r ++ gR++k+c++rw + 
   Csa05g013080.1 53 KGPWSPEQDEALTRLVTKCGPRNWTLISRGIP-GRSGKSCRLRWCNQ 98
                     79******************************.***********985 PP
2Myb_DNA-binding48.91.5e-15105148146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++++ eEd  ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa05g013080.1 105 KKPFSDEEDRMIISAHAVHGNK-WAVIAKLLP-GRTDNAIKNHWNS 148
                      689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3134899IPR017930Myb domain
SuperFamilySSF466897.49E-3050146IPR009057Homeodomain-like
SMARTSM007172.4E-1452101IPR001005SANT/Myb domain
PfamPF002494.7E-155398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2354106IPR009057Homeodomain-like
CDDcd001679.05E-135597No hitNo description
PROSITE profilePS5129424.176100154IPR017930Myb domain
SMARTSM007178.4E-16104152IPR001005SANT/Myb domain
PfamPF002494.1E-14105148IPR001005SANT/Myb domain
CDDcd001672.87E-11107147No hitNo description
Gene3DG3DSA:1.10.10.602.8E-23107153IPR009057Homeodomain-like
Gene3DG3DSA:3.80.10.103.1E-22403739IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS501819.524404440IPR001810F-box domain
SuperFamilySSF813831.57E-11404461IPR001810F-box domain
PfamPF006461.1E-6406443IPR001810F-box domain
SMARTSM002564.9E-4410450IPR001810F-box domain
SuperFamilySSF520478.24E-11516613No hitNo description
SuperFamilySSF520478.24E-11648739No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MNAATYQPPE LMSSVNLSIG CDGTEDAIYA AVAEELAVLA KSDSNGGGRS KVKGPWSPEQ  60
DEALTRLVTK CGPRNWTLIS RGIPGRSGKS CRLRWCNQLD PCLKKKPFSD EEDRMIISAH  120
AVHGNKWAVI AKLLPGRTDN AIKNHWNSAL RRKPAGLWMD HHHHQGMSNT EIYQMQQPSK  180
VRKISNASSP REHLPREETK SITPPPVLLN DAKMDDVANE PPPREKEKSK KPDVYRPVAR  240
MGAFSICKQG YMNHHHMAPC EGPLVQASRP GSLAAKFLQS LCYEPIVPSR CGRGCCDHPD  300
NKTLSSSSKS VLGPEFVDYE EHSSAELDQE LISISTDLNN IAWIQSGLNN NHYSKEAEQS  360
LKADDQFHRV KFTGMVNNGV SVSNGDGATA AVRSPSHRDR SDGVDSISAL PDEILQNILT  420
SLPTRFAIRT SILSKRWRHV WCDTPCLNFE RCGDKYLSAD SINETLARYK ARKMVSFHLC  480
FECKNSPYIE SWIEFAKSRK VENMTLDLGS HAFDCYAMRD SLYINSYVKK LTLRSFAFHD  540
YKVPSLSVSW TSLKELSLRD CSLAGGTTMP KILSGCPVLQ SLTLDMCCCY KLKVLDLSKS  600
LRLTTLEIDS SGWDSGLQIV APHIRNLGLT LTPYSPCDLV DVSSLSEARL DILSISREAL  660
VADFLQQFVQ NMMEKLHNVE KLTFGENFIK IFSFAELLRV PLPLFNFKAL TIEIMISQCA  720
IHGVVKLLQS SRELKKLTVH TKDGRAKPDE SFDLYVNWHC LETNKTWCSE ALLFKNIIRD  780
NVIVESIILF IKLVLKSTKT LENMVVRFGS FLEERRFEEL LEMVPMLSHD NNNVSIVLGS  840
TTKSDQSQML RPDVRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-37521536107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g013080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935821e-116AB493582.1 Arabidopsis thaliana At2g39880 mRNA for hypothetical protein, partial cds, clone: RAAt2g39880.
GenBankAF1759881e-116AF175988.1 Arabidopsis thaliana putative transcription factor (MYB25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512946.10.0PREDICTED: putative F-box protein At1g49610
TrEMBLD7LYT50.0D7LYT5_ARALL; Uncharacterized protein
STRINGXP_010512946.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-158myb domain protein 25