PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g015240.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 339aa MW: 38362.6 Da PI: 9.6263

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g015240.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.2e-32	47	100	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+ Csa05g015240.2 47 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 100 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.759	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-29	43	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-14	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	48	99	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEGGEKTDRE EEEDEGEGQE SKASSNSTVE ESDKKTKVRP YVRSKVPRLR WTPDLHLRFV 60 RAVERLGGQE RATPKLVRQM MNIKGLSIAH VKSHLQMYRS KKIDDHGQAI SSDHKHLFET 120 STDRNIYKLS QLPMFRGYNH NNDSPFRYGS KFSNASLWSS SSHETNRSLI DQIRPGLVRS 180 SSVTNNIRGS EYWTNNRSFQ NIHSSLVSNH LPKLRHDHRE RTNSVSIQGH SSRTLEKFQI 240 GVEERINMHA YCNKTTGKRN ASTSLDLDLD LSLKITQPEK TVSEETESAA TTTDQTLSLS 300 LCSGSSALKK SRLIKTDDEE DRTVKSGCRQ ASTLDLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-15	48	102	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	48	102	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	48	102	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	48	102	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	48	102	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g015240.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010509196.1	0.0	PREDICTED: two-component response regulator ARR18-like isoform X1
TrEMBL	R0HTS2	0.0	R0HTS2_9BRAS; Uncharacterized protein
STRING	XP_010509196.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-160	G2-like family protein