PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g016590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 432aa    MW: 47289.3 Da    PI: 9.6991
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g016590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.1e-32166222360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  +++v ei+Y+geHnh+k
  Csa05g016590.1 166 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSV-EGQVSEIVYQGEHNHSK 222
                     9***************************************.***************85 PP
2WRKY101.93.7e-32353410259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver ++dp+++++tYeg+Hnh+
  Csa05g016590.1 353 EDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERVSDDPRAFITTYEGKHNHH 410
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-28161223IPR003657WRKY domain
SMARTSM007741.5E-33164222IPR003657WRKY domain
SuperFamilySSF1182901.83E-24165223IPR003657WRKY domain
PfamPF031061.2E-24166220IPR003657WRKY domain
PROSITE profilePS5081122.768166223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-31342410IPR003657WRKY domain
PROSITE profilePS5081131.318347412IPR003657WRKY domain
SuperFamilySSF1182903.66E-27348410IPR003657WRKY domain
SMARTSM007743.2E-37352411IPR003657WRKY domain
PfamPF031062.2E-25353410IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEVKEGDRVV IAKPVASRPS SSSSFRNFTE LLTDSITVSP QSNCHDIVDV AIRPKTLRFN  60
QPVAASVSFP RVEGNTSNGI GKSCDDSDSK SYVVYKPKAK LVSKATVSAL ANMLQGNRQQ  120
TWRQTEAVGY GKSVSQGTYR SGPNVVQKVP TFTESETSIG DRSSVDGYNW RKYGQKQVKG  180
SECPRSYYKC THPKCPVKKK VERSVEGQVS EIVYQGEHNH SKPSCPLPRR ASSTTSSGFQ  240
KPPKAVASEG SMGQDPTNSL YSSLWSNQSN ESSKSRTEKM NEGCVITPFE FAVPKSTNSN  300
AGTSDSGCRS SQCDEGSNGG ELDDPNRNKR RKNEKQSSEA GVSQGSVESD SLEDGFRWRK  360
YGQKVVGGNA YPRSYYRCTS ANCRARKHVE RVSDDPRAFI TTYEGKHNHH LLLNPPTSSS  420
TLPFNSPQLS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27153411378Probable WRKY transcription factor 4
2lex_A1e-27153411378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g016590.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2896070.0AB289607.1 Arabidopsis thaliana TTG2 mRNA for WRKY transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509359.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_010509360.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_019101272.10.0PREDICTED: WRKY transcription factor 44-like
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLR0HPG30.0R0HPG3_9BRAS; Uncharacterized protein
STRINGXP_010509359.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]