PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g016840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 422aa    MW: 47867 Da    PI: 6.6327
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g016840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07311358448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT +E   lvd++  +G g W+ I + +    ++Rt+ +++++w+++l
   Csa05g016840.1 311 WTVDEVMTLVDGISHFGVGKWTDIKNNFFqsaTHRTPVDIRDKWRNLL 358
                      ***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-12303366IPR009057Homeodomain-like
PROSITE profilePS5129414.196303362IPR017930Myb domain
SMARTSM007172.4E-7307360IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-16309368IPR009057Homeodomain-like
CDDcd116601.50E-20309359No hitNo description
PfamPF139213.4E-6311365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MRSSFCESSI SGLDLNHCGP FRMDRTPGFP ASGFKCDTVD ENVCHSNEYK MSDMKRFLME  60
PTHDNTAVDS FLGLGMETMG LSSTMDEFSH AFDFSFLPDY GGLDSCTTQD VEAGLKFQIL  120
DGFLDEVEEV EDIYASHDLS STSNHILPET EDMKKVSELE DGGPYGNISF HSESYSPGIS  180
GSTGLSEWSK ETVPHAESQN VSREKLKDSL DSNESEDDKK PLSTFIGSWA KRSRNRKKNF  240
PNTAYRRLDS SGERMSYDFR PRKGPIKKYM HTSTENTFPD DQLTSSESED DISVRKTSRT  300
RSDRRKHQRM WTVDEVMTLV DGISHFGVGK WTDIKNNFFQ SATHRTPVDI RDKWRNLLKA  360
SYNAGEAEER RKSSSRPMPK DILHRVRELA SRHPSPFSRS SCLVYDSSRS QSTSKKKKKR  420
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-14295386490Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235KRSRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g016840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509403.10.0PREDICTED: uncharacterized protein LOC104785817
RefseqXP_010509404.10.0PREDICTED: uncharacterized protein LOC104785817
TrEMBLA0A178VNS90.0A0A178VNS9_ARATH; TRFL8
STRINGXP_010509403.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.16e-21TRF-like 3