PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g017440.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 180aa MW: 20963.8 Da PI: 9.6428

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g017440.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.1e-19	72	127	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +k+ ++t+eql+ Le+ F+++ ++s +++ +L+k+lgL+ rq+ vWFqNr+a++k+ Csa05g017440.1 72 KKKKKMTSEQLKFLERSFQEEIKLSPDRKMKLSKELGLQPRQIAVWFQNRKARWKN 127 78999*************************************************95 PP
2	HD-ZIP_I/II	110.7	9.8e-36	72	163	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+++++eq+k+LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d + +e+e L++e +L++ ++ Csa05g017440.1 72 KKKKKMTSEQLKFLERSFQEEIKLSPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDVVCREKELLQEELIQLKSMIR 163 59**************************************************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.55E-20	56	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.524	68	128	IPR001356	Homeobox domain
SMART	SM00389	1.2E-17	70	132	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-16	72	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.3E-20	74	135	IPR009057	Homeodomain-like
CDD	cd00086	1.49E-14	78	129	No hit	No description
PRINTS	PR00031	7.3E-5	99	108	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	103	126	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.3E-5	108	124	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEYWSSSFID GASSSNFISP FYNFDHFQGN QDNRCLASGT MVGAQQGMLH VPLQMVESGY 60 GEESNNNNGQ QKKKKKMTSE QLKFLERSFQ EEIKLSPDRK MKLSKELGLQ PRQIAVWFQN 120 RKARWKNKQL EHLYESLRQE FDVVCREKEL LQEELIQLKS MIRENGSNKK VQNWGKAFS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g017440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056569	5e-93	DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010513022.1	1e-130	PREDICTED: homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q4PSR7	1e-109	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	R0HRP8	1e-116	R0HRP8_9BRAS; Uncharacterized protein
STRING	XP_010513022.1	1e-130	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	1e-78	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]