PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g017590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 151aa    MW: 16204.2 Da    PI: 7.5309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g017590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-171564355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr+++++ +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Csa05g017590.1 15 YRGVRQRRNSDKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 64
                    9******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.5091472IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-201474IPR016177DNA-binding domain
SMARTSM003807.0E-321478IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-281473IPR001471AP2/ERF domain
PRINTSPR003674.0E-81526IPR001471AP2/ERF domain
PfamPF008474.7E-111564IPR001471AP2/ERF domain
CDDcd000182.11E-291574No hitNo description
PRINTSPR003674.0E-85474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MQGTSKDNGG RHPMYRGVRQ RRNSDKWVSE IREPRKPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQAELN FPNSVSSLPV PASMSPGDIQ AAAASAAAAF GAARDAIVMA NNNSETSGVV  120
SMNDSYENTN MNEFMDDDLA LLIKTVKLRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-141077368ATERF1
3gcc_A1e-141077368ATERF1
5wx9_A1e-14776276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g017590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069191e-151AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608671e-151AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026851e-151CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466041e-151DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530451e-151DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509470.17e-98PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-73ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLR0G0M28e-80R0G0M2_9BRAS; Uncharacterized protein
STRINGXP_010509470.13e-97(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.19e-65ERF family protein