PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g018030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 248aa    MW: 28711.5 Da    PI: 6.8446
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g018030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.42.5e-3239144199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ltpsdv+k++rlv+pk++ae++        +   e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ 
  Csa05g018030.1  39 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaaDA-VEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKNLDAGDVVLFHRHRA 132
                     99*****************************99644.46888*************************************************8877 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     ++++++++++r+
  Csa05g018030.1 133 DGGRFFIGWRRR 144
                     9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-4133152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-3136144IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-2738134No hitNo description
PROSITE profilePS5086314.21239145IPR003340B3 DNA binding domain
SMARTSM010192.5E-2439145IPR003340B3 DNA binding domain
PfamPF023621.1E-2939144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSITQYSSDF HYHSLMWQQQ QQQQQHHQND VVEEKEALFE KPLTPSDVGK LNRLVIPKQH  60
AERYFPLAAA AADAVEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKNLD  120
AGDVVLFHRH RADGGRFFIG WRRRGDSSSS SDSYRHHQPN ASLQYHPHAG GQAVESQRVN  180
SKTLRLFGVN MECQLDSDWS EPSTPDGSNT CTTNNDQFHF YPQQQQQHYP PPYYMDLSFT  240
GDVNRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-49321441113B3 domain-containing transcription factor NGA1
5os9_B4e-49321441113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g018030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509512.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-152Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLR0HR361e-152R0HR36_9BRAS; Uncharacterized protein
STRINGXP_010509512.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-123B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]