PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g018850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 264aa    MW: 28585.7 Da    PI: 9.4666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g018850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-13155180126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G +C+FaHg
  Csa05g018850.1 155 WKTRICNKWEITGYCPFGTNCHFAHG 180
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-1468105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-670103IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-57198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7987199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-17149184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10151185IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8154181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216154182IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10155180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSHRRASGSD VVHVKTTNDL PPENRFPNSG SDSSVWATED DYNRVWAMHP DDAESPSKKT  60
RSSSSEIGKS FFKTKLCFKF RTGTCPYAAS SCHFAHSSEE LRRPPPPPNR QETAATEALR  120
NRESFAISLG PRGYGGAAAS DGGGNVAQTL KPPNWKTRIC NKWEITGYCP FGTNCHFAHG  180
ASELHNFGGG LVEGEGKIGT STTPATKQTG QGSTVTNLVS PGVPSQRTLS AVMQKPKGVR  240
TQRKWKGPDK ISRVYGDWID DIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g018850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509617.10.0PREDICTED: zinc finger CCCH domain-containing protein 28-like
SwissprotQ5PP651e-131C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLR0HDV01e-146R0HDV0_9BRAS; Uncharacterized protein
STRINGXP_010509617.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-117C3H family protein