PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g020390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 412aa    MW: 44947.6 Da    PI: 6.835
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g020390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.4e-31182240259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Csa05g020390.1 182 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 240
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-31175242IPR003657WRKY domain
PROSITE profilePS5081133.109176242IPR003657WRKY domain
SuperFamilySSF1182902.62E-26179242IPR003657WRKY domain
SMARTSM007741.4E-37181241IPR003657WRKY domain
PfamPF031068.4E-26183240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSPPPTSDLH VDFPTAAASV SCLTNPFGDP FVSMTDPLFH LAANSGFLSG AGDNESNNNF  60
AILPKGFEDD QLNSQCSVFP RIRISQSNII TDASTCNSPA IAVSNAPTSP WGMISVDTTN  120
SPRNCVLVDN SNNMSSSSQI HQISSSPQNL GIKRRKSQTK KVVCIPAPAA MNSRSSGEVV  180
PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP  240
WPTQRNALAG STRSSSSSSS NLSSKSTTAT VATTTSPSSR FSQNNINKDE HNKSHLPSSS  300
TPPPYAAEAV KEEKVEERHD SMEFDNDVED TYRPELLPAF QHQPEDFFAD LDELEGDSLD  360
MLLNHSSGGG NMDNTTTIPD SKRSGVKEYW WMGHKAKMSI HSFSSMTQTH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-26156243280Disease resistance protein RRS1
5w3x_D6e-26156243280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g020390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509700.10.0PREDICTED: probable WRKY transcription factor 35
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLR0HCF30.0R0HCF3_9BRAS; Uncharacterized protein
STRINGXP_010509700.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.10.0WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]