PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g020530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 203aa    MW: 22686.1 Da    PI: 8.2369
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g020530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1002.5e-3198154158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rakle++++  +ks+kpy+heSRh hA+rRpRg+gGrF
  Csa05g020530.1  98 EEPVFVNAKQYHGILRRRQSRAKLEARNRD-IKSKKPYMHESRHLHAIRRPRGCGGRF 154
                     69************************9998.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.3E-3596157IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.9897157IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-2699154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-24100122IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860102122IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.8E-24131154IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTSSVHELSD KNDSHGKQEE RPDSQTRPSV PSGRSSESID TTSVYSEAVA HGLYPYPDPY  60
YRSVFAQQPY LPHPYPGVQL QLMGMQQPGV PLQCDAVEEP VFVNAKQYHG ILRRRQSRAK  120
LEARNRDIKS KKPYMHESRH LHAIRRPRGC GGRFLNAKKK NGEHKEEEGE EEESSDENTS  180
EASSSLRSEK LAIAASAPNG RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-2197169173NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g020530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0724140.0AY072414.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
GenBankAY1147110.0AY114711.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509716.11e-148PREDICTED: nuclear transcription factor Y subunit A-4-like
RefseqXP_010509717.11e-148PREDICTED: nuclear transcription factor Y subunit A-4-like
RefseqXP_010509718.11e-148PREDICTED: nuclear transcription factor Y subunit A-4-like
SwissprotQ8VY641e-130NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLA0A178VWS51e-127A0A178VWS5_ARATH; NF-YA4
STRINGXP_010509716.11e-148(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.11e-117nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]