PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g030580.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 147aa MW: 16333.5 Da PI: 10.2271

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g030580.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	24.6	5.1e-08	112	136	2	26
RWP-RK 2 ekeisledlskyFslpikdAAkeLg 26 ek++sl++l++yFs+++kdAAk+Lg Csa05g030580.1 112 EKNVSLNVLQQYFSGSLKDAAKSLG 136 89*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01080	4.9E-27	1	96	IPR001108	Peptidase A22A, presenilin

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016485	Biological Process	protein processing
GO:0016021	Cellular Component	integral component of membrane
GO:0004190	Molecular Function	aspartic-type endopeptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
AFLNSLVFVA AITVATFVLV LLFYLRCVKF LKFYMGFSAF IVLGNLGGEI LVLLIDRFRF 60 PIDCITFLIL LFNFSVVGVF AVFMSKFSIL VTQGYLDISG TKRSEKKKSS TEKNVSLNVL 120 QQYFSGSLKD AAKSLGGELR KVEDKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g030580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007113	1e-113	AC007113.7 Arabidopsis thaliana chromosome 2 clone F6K5 map m283, complete sequence.
GenBank	AK227760	1e-113	AK227760.1 Arabidopsis thaliana mRNA for putative presenilin, complete cds, clone: RAFL14-33-I19.
GenBank	BT028914	1e-113	BT028914.1 Arabidopsis thaliana unknown protein (At2g29900) mRNA, complete cds.
GenBank	CP002685	1e-113	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510683.1	8e-59	PREDICTED: presenilin-like protein At2g29900
Swissprot	Q9SIK7	1e-54	PSNB_ARATH; Presenilin-like protein At2g29900
TrEMBL	R0HCL9	3e-54	R0HCL9_9BRAS; Presenilin
STRING	XP_010510683.1	3e-58	(Camelina sativa)

Publications ? help Back to Top
Smolarkiewicz M, et al. Gamma-secretase subunits associate in intracellular membrane compartments in Arabidopsis thaliana. J. Exp. Bot., 2014. 65(12): p. 3015-27 [PMID:24723404]