PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g034260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 568aa    MW: 62679.6 Da    PI: 7.7401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g034260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05139162123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F r  +L++Hi   H
  Csa05g034260.1 139 FPCNSCGEIFARTNLLESHIAIkH 162
                     89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.764139167IPR007087Zinc finger, C2H2
PROSITE patternPS000280141162IPR007087Zinc finger, C2H2
SuperFamilySSF563996.81E-11164379No hitNo description
Gene3DG3DSA:3.90.228.102.9E-4307380IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.92E-7379566No hitNo description
Gene3DG3DSA:3.90.228.105.0E-4494566IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAARKLGSLL RQYFFSLCFL FLGCFFFPKG ADCKQKRRKK KLRTVSLSSS SGSALSSSWT  60
YLKRVFLSTT RISKSRNQTH PNGTLTSARS SQNSLVTLVQ PETTTTNQPD PDTRTQQQPE  120
FEISYSDHNN PLFLLHEIFP CNSCGEIFAR TNLLESHIAI KHAVSELIAG ESSTNIVEII  180
FKSGWPIGKS PEINRILKIH NSQKILTRFE EYREFVKAKA ARSRWEDERC VADGNELLRF  240
YCSTFMCDLG QNGKSNLCGH QYCSVCGIIG SGFSPKLDGI ATLATGWRGH VAVPEEVEEE  300
FGFMNVKRAM LVCRVVAGRV GCDLMIDDVD KSEGGGGGGY DSLVGQSGSK SGALLRIDDD  360
ELLVFNPRAV LPCFVIVYTI NRILKIHNSQ KILTRFEEYR EFVKAKAARS RWEDERCVAD  420
GNELLRFYCS TFMCDLGQNG KSNLCGHQYC SVCGIIGSGF SPKLDGIATL ATGWRGHVAV  480
PEEVEEEFGF MNVKRAMLVC RVVAGRVGCD LMIDDVDKSE GGGGGGYDSL VGQSGSKSGA  540
LLRIDDDELL VFNPRAVLPC FVIVYTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641RRKKKL
23642RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g034260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054960.0AC005496.3 Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete sequence.
GenBankAY0843790.0AY084379.1 Arabidopsis thaliana clone 106148 mRNA, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510450.10.0PREDICTED: uncharacterized protein LOC104786697 isoform X1
RefseqXP_010510451.10.0PREDICTED: uncharacterized protein LOC104786697 isoform X2
TrEMBLR0HTA30.0R0HTA3_9BRAS; Uncharacterized protein
STRINGXP_010510451.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-173C2H2 family protein