PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g038290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 119aa    MW: 13649.9 Da    PI: 10.9956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g038290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.41.9e-09173129196
            GRAS 129 lqaLa...sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                     +q+La    R++ + sl++T +++p s   ++ el+ t+e+L+ fA e++vpfe+++l  + l +  ++ L++
  Csa05g038290.1   1 MQELAsggRRRNRASSLKLTDIAPPPSIvsDEFELRFTEENLKTFAGEVKVPFEIELLSIELLLNPAYWPLSL 73 
                     788985544779999*********9988999**************************9777666666777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.6E-7173IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MQELASGGRR RNRASSLKLT DIAPPPSIVS DEFELRFTEE NLKTFAGEVK VPFEIELLSI  60
ELLLNPAYWP LSLSPFIRKR SNCGESPDKL RRLRLPPVDP PFPQTNLIKR RRLLRQRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112KRRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g038290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546051e-115AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182041.12e-35GRAS family transcription factor
SwissprotQ7XJM82e-36SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A384KUR05e-34A0A384KUR0_ARATH; LOM1
TrEMBLB7ZWR85e-34B7ZWR8_ARATH; At2g45160
STRINGAT2G45160.19e-35(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.12e-21GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]