PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g042090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 171aa    MW: 19250.6 Da    PI: 9.4746
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g042090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.41e-1754151194
             NAM   1 lppGfrFhPtdeelvveyLkkk...vegkk.leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                     lppGf ++P+d e++   L++k   + g++ + l +  ++ v+iy+++P++L  k+k+ +++ew+f sk++k  + gk+++r  k gyW+at  +
  Csa05g042090.1  54 LPPGFNYRPNDLEVL-LLLCQKrdyLGGNRdF-LVDLpVHLVNIYESNPEQLTVKFKKgNDTEWFFISKKNKMGKGGKKQKRCDKGGYWHATVAS 146
                     79***********99.5566652423334433.335559999**********965555267799999999999999******************* PP

             NAM  90 kevls 94 
                     +e+ +
  Csa05g042090.1 147 EEIDD 151
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-1948158IPR003441NAC domain
PROSITE profilePS5100520.20954170IPR003441NAC domain
PfamPF023658.6E-655147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MPGRNKRKER SLPEPEPEPS GIPSSSADDH HLSSSSSSAD HSLSSRPPST RPCLPPGFNY  60
RPNDLEVLLL LCQKRDYLGG NRDFLVDLPV HLVNIYESNP EQLTVKFKKG NDTEWFFISK  120
KNKMGKGGKK QKRCDKGGYW HATVASEEID DGTRPRWFQN RTIILRGETT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g042090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513323.11e-109PREDICTED: NAC domain-containing protein 19-like
TrEMBLR0H2592e-37R0H259_9BRAS; Uncharacterized protein
STRINGXP_010513323.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.11e-25NAC domain containing protein 63