PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g047250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 162aa    MW: 19528.9 Da    PI: 10.3918
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g047250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.69.5e-101512333128
             NAM  33 vikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.............k 110
                     ++++ d+y  +P++L   +++    ++  yfF++r+ ++    ++    +sg W+  g+dk ++s+ +g+  g kk+  f              k
  Csa05g047250.1  15 FLRSQDVYCKNPSTLF-DTQNpwiLHDGRYFFVNRSVNS---GKTDGCDESGCWRVMGRDKLIKSEkTGKILGFKKVYKFCekekpksmfkfweK 105
                     477889999******5.222222345678****998754...467777899*************9866667788888888854444444444432 PP

             NAM 111 grapkgektdWvmheyrl 128
                     ++++   k  Wvm+eyrl
  Csa05g047250.1 106 EKRRVRDKRVWVMEEYRL 123
                     3444446999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.0381139IPR003441NAC domain
SuperFamilySSF1019414.58E-2211138IPR003441NAC domain
PfamPF023655.6E-821123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MMIIDNNENV WPRHFLRSQD VYCKNPSTLF DTQNPWILHD GRYFFVNRSV NSGKTDGCDE  60
SGCWRVMGRD KLIKSEKTGK ILGFKKVYKF CEKEKPKSMF KFWEKEKRRV RDKRVWVMEE  120
YRLASQWKQG YVICKIRFPK PTRVHVVQPY PRLLYMMSLM I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g047250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473211.13e-97PREDICTED: uncharacterized protein LOC104752708
TrEMBLR0I8R21e-74R0I8R2_9BRAS; Uncharacterized protein
STRINGXP_010473211.11e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.12e-62NAC family protein