PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g053570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 373aa    MW: 41952.7 Da    PI: 9.6691
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g053570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.99.1e-082412871763
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     A+rsR RK+++i eLe+ v++L+ae ++ + el+ l++    l +e+
  Csa05g053570.1 241 AQRSRVRKLQYISELERNVQTLQAEGSKVAAELDFLNQRNLILSMEN 287
                     89********************************9999887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0058230289IPR004827Basic-leucine zipper domain
CDDcd147032.73E-14233280No hitNo description
Gene3DG3DSA:1.20.5.1708.2E-5241282No hitNo description
SuperFamilySSF579591.13E-5241283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYTEYIP SGLIGSRNSQ KLGDEKTHHQ  60
RTSSESHLVE ELPFWLDDLL NEPESPARKC GHRRSSSDSY AYLDVANATN ISLTLQNDFS  120
YRNTVSSRGM QDLDRSKNAQ DAANYSDANF LKQKSRQRDS LVASGARPSW LPFPRESGGG  180
KNMGSSYMSQ EATVLSERKN YAEPLSHDPN LKMYSSEENN SNPSPVTYEA DNTKRAKQQF  240
AQRSRVRKLQ YISELERNVQ TLQAEGSKVA AELDFLNQRN LILSMENKAL KQRLESIAQE  300
KLIKQLEQEV LEKEIGRLRA LYQQQQQTQK PSASRGRTTG KDLESQFSSL SLNTKDSNCR  360
RDSVSVMGQF HF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g053570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0039800.0BT003980.1 Arabidopsis thaliana clone RAFL15-22-D03 (R20596) putative bZIP family transcription factor (At1g58110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511087.10.0PREDICTED: uncharacterized protein At4g06598
TrEMBLD7KY870.0D7KY87_ARALL; Predicted protein
STRINGXP_010511087.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.20.0bZIP family protein