PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g059420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 160aa    MW: 18410.8 Da    PI: 5.0163
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g059420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081644129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     rg+WT  Ed++l ++++ +G g W+t ++
   Csa05g059420.1 16 RGAWTDHEDKILREYITTHGEGKWSTLPN 44
                     89***********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-101046IPR009057Homeodomain-like
PROSITE profilePS500906.761142IPR017877Myb-like domain
SuperFamilySSF466891.56E-61245IPR009057Homeodomain-like
CDDcd001670.008971840No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MRKRATNTLK RAELNRGAWT DHEDKILREY ITTHGEGKWS TLPNQAVEEG EIDVHGEAKA  60
KPDREDGVVE LELDPGVNED EKELLHEFDV VDTQKSYKKE MVILITKTCG DSKHKKVKYS  120
IMKVYCADFI LQETVSNEME DESQAEFLTK KLYFTRNCI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g059420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154771e-37AB015477.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK9.
GenBankAF3719811e-37AF371981.2 Arabidopsis thaliana putative transcription factor MYB123 (MYB123) mRNA, complete cds.
GenBankAJ2994521e-37AJ299452.1 Arabidopsis thaliana TT2 gene for transparent testa 2 protein, exons 1-3.
GenBankAY5196301e-37AY519630.1 Arabidopsis thaliana MYB transcription factor (At5g35550) mRNA, complete cds.
GenBankCP0026881e-37CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4470001e-37DQ447000.1 Arabidopsis thaliana clone pENTR221-At5g35550 myb family transcription factor (At5g35550) mRNA, complete cds.
GenBankDQ6533181e-37DQ653318.1 Arabidopsis thaliana clone 0000017211_0000012024 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-23MYB family protein