PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g070900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 243aa    MW: 27592.9 Da    PI: 8.2047
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g070900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll +++ ++G g W+ ++ + g++R++k+c++rw +yl
   Csa05g070900.1 10 KGAWTPEEDSLLRQCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding521.6e-1663107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T +E +ll++++k+lG++ W++Ia +++ gRt++++k++w++ 
   Csa05g070900.1  63 RGEFTSDEIDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 107
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-23560IPR009057Homeodomain-like
PROSITE profilePS5129425.849561IPR017930Myb domain
SuperFamilySSF466893.22E-297104IPR009057Homeodomain-like
SMARTSM007178.3E-15959IPR001005SANT/Myb domain
PfamPF002491.0E-151057IPR001005SANT/Myb domain
CDDcd001672.87E-101257No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2261112IPR009057Homeodomain-like
SMARTSM007171.0E-1562110IPR001005SANT/Myb domain
PROSITE profilePS5129417.84762112IPR017930Myb domain
PfamPF002496.1E-1563108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MERSSKGLKK GAWTPEEDSL LRQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWVNYLNPN  60
INRGEFTSDE IDLLLRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTNLAK QLDSRFRSKM  120
RNSEGTCSAA TPAQKHTVIR PRPRFFSNNN WSISVNDLSE VGIGEVISTK YGSITSNKDD  180
EKCDFVNNLT DGESMWRKRL LEENQEEDAV GNVGNTIDEE GDSSSIDSMS STFEKLESLF  240
NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2481145110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g070900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513540.11e-179PREDICTED: transcription factor MYB114-like
SwissprotQ9ZTC33e-83MYB90_ARATH; Transcription factor MYB90
TrEMBLA0A078J6561e-91A0A078J656_BRANA; BnaA02g35530D protein
STRINGXP_010513540.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66390.19e-85myb domain protein 90
Publications ? help Back to Top
  1. Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
    Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
    New Phytol., 2015. 206(1): p. 422-35
    [PMID:25425527]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
    Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
    Phytochemistry, 2015. 111: p. 21-6
    [PMID:25659750]
  4. Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
    GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(11): p. e0143212
    [PMID:26588092]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Li N, et al.
    The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
    Funct. Integr. Genomics, 2018. 18(3): p. 341-353
    [PMID:29372433]