PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g071990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 246aa    MW: 27603.7 Da    PI: 6.0435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g071990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl
   Csa05g071990.1 12 RGAWTAEEDSLLRQCIDKYGEGKWHQVPFRTGLNRCRKSCRLRWLNYL 59
                     89********************************************97 PP
2Myb_DNA-binding46.11.2e-1465110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr   +E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   Csa05g071990.1  65 RGRLNSDEIDLIIRLHNLLGNR-WSLIAGRIP-GRTANDIKNYWNTHL 110
                      788899****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21561IPR009057Homeodomain-like
PROSITE profilePS5129425.723763IPR017930Myb domain
SuperFamilySSF466894.03E-279106IPR009057Homeodomain-like
SMARTSM007176.5E-131161IPR001005SANT/Myb domain
PfamPF002491.6E-141259IPR001005SANT/Myb domain
CDDcd001677.94E-101459No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2162113IPR009057Homeodomain-like
PROSITE profilePS5129417.71564114IPR017930Myb domain
SMARTSM007172.4E-1364112IPR001005SANT/Myb domain
PfamPF002494.8E-1366110IPR001005SANT/Myb domain
CDDcd001675.41E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEAPSSNNGV RRGAWTAEED SLLRQCIDKY GEGKWHQVPF RTGLNRCRKS CRLRWLNYLR  60
PDIKRGRLNS DEIDLIIRLH NLLGNRWSLI AGRIPGRTAN DIKNYWNTHL SKKQDMSGKN  120
QMGERNPSSS EATPPPQINA IRPQPRSCSN NNGCSHVNGL PEVDLGGITD TDNIVTCNRD  180
EEKDGRVNNV MDGESMWWES LLEENADADH AGDLAAMKTD EAGPSLMSSS SSMFDFEQLF  240
RDWGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-21121157109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
UniProtTranscription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g071990.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513543.10.0PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV94e-89MY113_ARATH; Transcription factor MYB113
SwissprotQ9ZTC36e-89MYB90_ARATH; Transcription factor MYB90
TrEMBLE5D8F52e-99E5D8F5_BRAOB; MYB2
STRINGXP_010513543.11e-180(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-91myb domain protein 113
Publications ? help Back to Top
  1. Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
    Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
    New Phytol., 2015. 206(1): p. 422-35
    [PMID:25425527]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
    Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
    Phytochemistry, 2015. 111: p. 21-6
    [PMID:25659750]
  4. Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
    GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(11): p. e0143212
    [PMID:26588092]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Li N, et al.
    The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
    Funct. Integr. Genomics, 2018. 18(3): p. 341-353
    [PMID:29372433]