PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g072010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 103aa    MW: 11972 Da    PI: 10.6785
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g072010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-071068147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqky 47
                     +g WT+ Ed ll++++ ++G g W+ ++ + g                R +  +++rw++y
   Csa05g072010.1 10 KGTWTAKEDSLLKQCIDKYGEGKWHQVPLRAGifheltswnlctakPMREG--LRLRWLNY 68
                     799*******************99999998887766666666654433333..66666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.367573IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-13672IPR009057Homeodomain-like
SMARTSM007170.001971IPR001005SANT/Myb domain
PfamPF002491.2E-61069IPR001005SANT/Myb domain
SuperFamilySSF466891.86E-131197IPR009057Homeodomain-like
CDDcd001673.39E-41236No hitNo description
Gene3DG3DSA:1.10.10.601.9E-47396IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MEGSSSGLKK GTWTAKEDSL LKQCIDKYGE GKWHQVPLRA GIFHELTSWN LCTAKPMREG  60
LRLRWLNYLV PSIKRGKFSS DDVDLLLRLH KLLRNRFIFF RH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g072010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513544.12e-40PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV93e-33MY113_ARATH; Transcription factor MYB113
TrEMBLA0A089G5X73e-37A0A089G5X7_BRACM; Anthocyanin R2R3-MYB transcription factor
TrEMBLA0A3P6B8861e-36A0A3P6B886_BRACM; Uncharacterized protein
TrEMBLM4CIX81e-36M4CIX8_BRARP; Uncharacterized protein
STRINGXP_010513544.16e-40(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3227822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.12e-35myb domain protein 114
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]