PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g079490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 309aa    MW: 34352.5 Da    PI: 8.7505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g079490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.7e-15233257226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tG C+yGd+C+FaHg
  Csa05g079490.1 233 KTELCNKWQETGACPYGDNCQFAHG 257
                     9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.7E-19226264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-11229263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.539231259IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-9231258IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-12233257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-9265300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-12265298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972269297IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5269296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEKLAATNVT DLACVTALNS NSPPPPLSPI SEKSFSNKHQ EEFAASFASL YNSIFSPDSQ  60
FPTSLSLSPS PPSSSSPPAR DDTTTEHRLS SATHPRSLLM ELDSLRREND ALRFENSDLL  120
KLIHLSTSSS SSSSVSSPPP IHNRQFRHQI SDFAPIHKHH SRSAKRNSLP KSISVRSPGY  180
LKINQGRSHG FGATDRQTSQ LSNTDSVSSQ KVCVATKERE ALELEVYRQG MTKTELCNKW  240
QETGACPYGD NCQFAHGIDE LRPVIRHPRY KTEVCRMIVT GAACPYGHRC HFRHSLTEQE  300
RMMMMLTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-22233298570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g079490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132881e-106AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026841e-106CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470553.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N31e-129C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLR0GI871e-155R0GI87_9BRAS; Uncharacterized protein
STRINGXP_010470553.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-123C3H family protein