PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g079950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 235aa    MW: 25575.2 Da    PI: 8.4344
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g079950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.31.3e-294106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll++ p++ r+ +++sl+yeA+ r+ +P+yG+vg++++++++l+q+
  Csa05g079950.1   4 SCNGCRVLRKGCSDNCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPGIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQA 98 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelallk 98 
                     ++e+++++
  Csa05g079950.1  99 AVEAVMRG 106
                     **998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6913109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-244104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH  60
LRPGIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTS  120
QAPPFNNNKL SDIRHVSSKD ENVKRRSRGA CKGERNVRSQ SHESSLSHES PVSSEGTTTE  180
EPKSWIGLEL TLGLEPLARG SHVVVPMKKR KLERCGTSED EDTCKIELGL VCSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g079950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2296500.0AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511626.11e-173PREDICTED: LOB domain-containing protein 40
SwissprotQ9ZW961e-149LBD40_ARATH; LOB domain-containing protein 40
TrEMBLR0I7X51e-153R0I7X5_9BRAS; Uncharacterized protein
STRINGXP_010511626.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-146LOB domain-containing protein 40