PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g080140.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 346aa MW: 38902.1 Da PI: 4.7912

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g080140.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.7	1.2e-39	84	225	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssas 83 a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aike ++ + + ++e+e+e++++ ++ Csa05g080140.1 84 AVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQEkklnngnedfgdnGGDVEEEVEEEEEEEDGD 178 89**************************************************************7776655544444333334444444444444 PP TCP 84 nsssgkaaksaa.kskksqksaasalnlak.esrakarararertre 128 ns +++++ k+ ++++a ++++++ sr +a+ +a+er+r+ Csa05g080140.1 179 NSLVYGSSPESCgKKVLCEAKKADKRKKNNeRSRDNAKGKAKERSRK 225 44444444444446666666666556665556676677777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-37	85	225	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.286	86	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MMSSSNKDGN NHGVYPLSLY LSSLPGHQDI IRNPYNQQLT ASPGQMVSAV PESLIDYMAF 60 NSNDAVNQRQ GFELPELSRE IKKAVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDM 120 LGFDKASKTL DWLLKKSRKA IKEVVQEKKL NNGNEDFGDN GGDVEEEVEE EEEEEDGDNS 180 LVYGSSPESC GKKVLCEAKK ADKRKKNNER SRDNAKGKAK ERSRKMAYDN PETVSDITQS 240 ETLDSFNRSI FSNEGEDMTH FFYKETIGEF GNQDPISTKM KVNMPTNMDQ SYNQDTGAFM 300 LIDQGSSSNY STIDLPLLDY NYEQNPFVDQ TFCAVTDTSF PGGLP*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MMSSSNKDGN NHGVYPLSLY LSSLPGHQDI IRNPYNQQLT ASPGQMVSAV PESLIDYMAF  60
NSNDAVNQRQ GFELPELSRE IKKAVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDM  120
LGFDKASKTL DWLLKKSRKA IKEVVQEKKL NNGNEDFGDN GGDVEEEVEE EEEEEDGDNS  180
LVYGSSPESC GKKVLCEAKK ADKRKKNNER SRDNAKGKAK ERSRKMAYDN PETVSDITQS  240
ETLDSFNRSI FSNEGEDMTH FFYKETIGEF GNQDPISTKM KVNMPTNMDQ SYNQDTGAFM  300
LIDQGSSSNY STIDLPLLDY NYEQNPFVDQ TFCAVTDTSF PGGLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-14	91	144	1	54	Putative transcription factor PCF6
5zkt_B	6e-14	91	144	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g080140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019101045.1	0.0	PREDICTED: transcription factor TCP1-like
Swissprot	Q9FYG7	1e-148	TCP1_ARATH; Transcription factor TCP1
TrEMBL	R0GHY5	1e-178	R0GHY5_9BRAS; Uncharacterized protein
STRING	XP_010511641.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-135	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]