PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g081820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 563aa    MW: 63031.7 Da    PI: 4.8987
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g081820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.54.7e-26228282155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Csa05g081820.1 228 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 282
                     68****************************************************8 PP
2Response_reg80.17.6e-27471531107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  Csa05g081820.1  47 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHG 139
                     89*********************.***************999999**********************5543.7********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a d+l Kp+ ++el
  Csa05g081820.1 140 ACDYLLKPIRMKEL 153
                     *********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.0E-14932556IPR017053Response regulator B-type, plant
SuperFamilySSF521721.99E-3544166IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-4344167No hitNo description
SMARTSM004485.6E-3245157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.75546161IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.5E-2447154IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.00E-3148161No hitNo description
Gene3DG3DSA:1.10.10.609.1E-28225287IPR009057Homeodomain-like
SuperFamilySSF466893.76E-16226286IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-22228282IPR006447Myb domain, plants
PfamPF002492.3E-7230281IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
PPLTFPKKEH SQLSPLSFSL FLSLSLSFLF LPANMEKGGF SPVGLRVLVV DDDPTWLKIL  60
EKMLKKCSYE VTTCGLAREA LRLLRERKDG YDIVISDVNM PDMDGFKLLE HVGLELDLPV  120
IMMSVDGETS RVMKGVQHGA CDYLLKPIRM KELKIIWQHV LRKKLQEVRD IEGCGYEGGA  180
DWITRYDEAH FLGGGEDVSF CKKRKDFDFD KKLLLQDESD PSSSSSKKAR VVWSFELHQK  240
FVNAVNQIGC DHKAGPKKIL DLMNVPWLTR ENVASHLQKY RLYLSRLEKE KELKCYSGGV  300
KSIDSSTKDA ELNSGHQSPG KSSFVFSEGI FQKATETDPK PLASASLSDP NTDVIMPPKT  360
KKTRIGFDPP ISSSAFDSLL SWNDVPEVLE SKPVLYENSF LQQQPLPSQS SYVTNSAPAL  420
MEEEMKPPYE TPVGGSGVTA DEFLMPQDKI PTVTIQDLDP SALSSMKLQE FSSNVTNNTE  480
AILRSLNCEL PESNHSASLD TDLDLSWLQG ERFLANTGLQ FQDYSSSPSF LSELPPHLWY  540
GNERLPDPDE YSFMVDQGLF IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17224287163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g081820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2282160.0AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511720.10.0PREDICTED: two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLR0GH620.0R0GH62_9BRAS; Two-component response regulator
STRINGXP_010511720.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]